mediation_test: Develop mediation models from driver, target and mediator

In byandell/CausalMST: Causal Model Selection Hypothesis Tests

Description

Develop mediation models from driver, target and mediator

Usage

mediation_test(target, mediator, driver, annotation, covar_tar = NULL,
  covar_med = NULL, kinship = NULL, driver_med = NULL,
  test = c("wilcoxon", "binomial", "joint", "normal"), pos = NULL,
  fitFunction = fitQtl2, data_type = c("phenotype", "expression"), ...)

Arguments

target	vector or 1-column matrix with target values
mediator	matrix of mediators
driver	vector or matrix with driver values
annotation	optional annotation data frame for mediators
covar_tar	optional covariates for target
covar_med	optional covariates for mediator
kinship	optional kinship matrix among individuals
driver_med	optional driver matrix for mediators
test	Type of CMST test.
pos	Position of driver.
fitFunction	function to fit models with driver, target and mediator
data_type	Type of mediator data.
...	additional parameters

byandell/CausalMST documentation built on May 13, 2019, 9:26 a.m.