reorderqtl: Reorder the QTL in a qtl object
In byandell/qtl: Tools for analyzing QTL experiments

Description Usage Arguments Details Value Author(s) See Also Examples

This function changes the order of the QTL in a QTL object.

1	reorderqtl(qtl, neworder)

`qtl`	A qtl object, as created by `makeqtl`.
`neworder`	A vector containing the positive integers up to the number of QTL in `qtl`, indicating the new order for the QTL. If missing, the QTL are ordered by chromosome and then by their position within a chromosome.

Everything in the input qtl is reordered except the altname component, which contains names of the form Q1, Q2, etc.

The input qtl object, with the loci reordered.

Karl W Broman, kbroman@biostat.wisc.edu

makeqtl, fitqtl, dropfromqtl, addtoqtl, replaceqtl

data(fake.f2)

# take out several QTLs and make QTL object
qc <- c(1, 6, 13)
qp <- c(25.8, 33.6, 18.63)
fake.f2 <- subset(fake.f2, chr=qc)

fake.f2 <- calc.genoprob(fake.f2)
qtl <- makeqtl(fake.f2, qc, qp, what="prob")

qtl <- reorderqtl(qtl, c(2,3,1))
qtl

qtl <- reorderqtl(qtl)
qtl