Man pages for byandell/qtl2pattern
Pattern Support for 'qtl2' Package
| allele1 | Allele plot for SNPs, alleles and allele pairs |
| create_probs_query_func | Create a function to query genotype probabilities |
| feature_snp | Summary of features with SNP information |
| feature_tbl | Summary of features |
| gene_exon | Get exons for set of genes |
| gene_snp | Summary of genes overlapping SNPs |
| genoprob_to_patternprob | Collapse genoprob according to pattern |
| get_feature_snp | Match features with SNPs |
| get.gene.locations | Helper function to set gene locations on plot. |
| get_gene_snp | Match genes with SNPs |
| merge_feature | Plot of merge_feature object |
| pattern_diplos | Extract pattern of diplotypes |
| pattern_label | Turn genotype probabilities into labels |
| read_fast | Read fast database with possible rownames |
| read_probs | Read genotype probability object from file |
| scan1pattern | Plot scan pattern usign ggplot2 |
| sdp_to_pattern | Convert sdp to pattern |
| snpinfo_to_map | Convert SNP info to map |
| snpprob_collapse | Collapse genoprob according to pattern |
| top_snps_pattern | Top SNPs organized by allele pattern |
