read_probs: Read genotype probability object from file

In byandell/qtl2pattern: Pattern Support for 'qtl2' Package

Read genotype probability object from file

Description

Read object from file stored according to method.

Usage

read_probs(
  chr = NULL,
  start_val = NULL,
  end_val = NULL,
  datapath,
  allele = TRUE,
  method,
  probdir = "genoprob"
)

Arguments

chr	vector of chromosome identifiers
start_val, end_val	start and end values in Mbp
datapath	name of folder with Derived Data
allele	read haplotype allele probabilities (if TRUE) or diplotype allele-pair probabilities (if FALSE)
method	method of genoprob storage
probdir	genotype probability directory (default "genoprob")

Value

list with probs = large object of class calc_genoprob and map = physical map for selected chr

Author(s)

Brian S Yandell, [e-mail]

byandell/qtl2pattern documentation built on Nov. 9, 2023, 7:57 p.m.