merge_feature: Merge SNP lod peaks with SNP feature information

Description Usage Arguments Value Author(s) Examples

Description

Merge all SNPs in small region with LOD peaks across multiple phenotype.

Summary of merge_feature object

Usage

1
2
3
4
5
6
merge_feature(top_snps_tbl, snpinfo, out_lmm_snps, drop = 1.5, dropchar = 0,
  gene_exon = get_gene_exon_snp(top_snps_tbl))

## S3 method for class 'merge_feature'
summary(object, sum_type = c("SNP type", "pattern"),
  ...)

Arguments

top_snps_tbl

tbl from get_top_snps_tbl or top_snps

snpinfo

SNP information table

out_lmm_snps

tbl from scan1 on SNPs

drop

include LOD scores within drop of max for each phenotype

dropchar

number of characters to drop on phenames

gene_exon

tbl from get_gene_exon_snp

object

of class merge_feature

sum_type

one of c("SNP type","pattern")

...

other arguments not used

Value

tbl with added information on genes and exons

table summary

Author(s)

Brian S Yandell, [email protected]

Brian S Yandell, [email protected]

Examples

1
## Not run: merge_feature(...)

byandell/qtl2pattern documentation built on May 13, 2019, 9:51 a.m.