fungalLoad: Load parameter sets for fungal growth

In cReedHranac/batwintor: Tool for bat hibernation energetics

Description

fungalLoad Loads fungal growth parameters from file and sets to selected option.

Usage

fungalLoad(path.to.params, growth.option)

Arguments

path.to.params	file path to the parameter files (without trailing "/")
growth.option	fungal growth parameters see Details

Details

Growth parameters are either: "Chaturvedi" (faster growth) from chatruvedi et al. PLoS One, ot "Verant" (slower growth rate), from Verent et al. PLoS One.

mu1: scaling parameter for Michaelis-Menton function

mu2: scaling parameter for Michaelis-Menton function

beta1: temperature dependant hourly rate shape parameter

beta2: temperature dependant hourly rate shape parameter

beta3: temperature dependant hourly rate shape parameter

Value

Returns a named list of fungal growth scaling parameters

Note

Requires both files to be in same directory with names rate.parms.csv and humid.parms.csv. These files are shipped with this package, however if you would like to alter these paremeters you may do so through their associated .csv files.

See Also

fungalGrowth, fungalSelect, scaleFungalGrowth

Examples

##FungLoad
foo <- "paramFiles"
fung.param <- fungalLoad(path.to.params = foo,
                       growth.option = "Verant")

cReedHranac/batwintor documentation built on Jan. 27, 2020, 7:39 p.m.