intersect_data_with_segment: Finds overlaps between target segments and data. Calculates...

In cancerdatasci/ceres: CERES for R

Description

Finds overlaps between target segments and data. Calculates result of a function across overlaps.

Usage

intersect_data_with_segment(seg, gr, dat.column, func = median,
  na.value = NA, do_parallel = F, ...)

Arguments

seg	GRanges object to calculate data over
gr	GRanges object with a data column
dat.column	which mcols name to find data in gr
func	what function to use (e.g.: median, mean, length)
na.value	value to use if segment has no overlaps with gr
...	extra arguments passed to func

Value

a vector with one value per segment

cancerdatasci/ceres documentation built on May 20, 2019, 6:44 p.m.