intersect_guide_with_copy_number: Get a matrix of CN for CRISPR target sites

Description Usage Arguments Value

Description

Get a matrix of CN for CRISPR target sites

Usage

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intersect_guide_with_copy_number(guide.gr, seg.gr, CN.column = "CN",
  guide.column = "Guide", do_parallel = F)

Arguments

guide.gr

GRanges object of sgRNA targets

seg.gr

List of GRanges objects of CN segments

CN.column

column to find CN data in seg.gr

guide.column

guide.gr must contain a column with guide sequence

do_parallel

run on multiple cores

Value

a matrix of CN data, each row is a guide, each column is a sample


cancerdatasci/ceres documentation built on May 20, 2019, 6:44 p.m.