Description Usage Arguments Value
Get a matrix of CN for CRISPR target sites
1 2 | intersect_guide_with_copy_number(guide.gr, seg.gr, CN.column = "CN",
guide.column = "Guide", do_parallel = F)
|
guide.gr |
GRanges object of sgRNA targets |
seg.gr |
List of GRanges objects of CN segments |
CN.column |
column to find CN data in seg.gr |
guide.column |
guide.gr must contain a column with guide sequence |
do_parallel |
run on multiple cores |
a matrix of CN data, each row is a guide, each column is a sample
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