intersect_guide_with_copy_number: Get a matrix of CN for CRISPR target sites
In cancerdatasci/ceres: CERES for R
Description
Usage
Arguments
Value
Description
Get a matrix of CN for CRISPR target sites
Usage
1
2
intersect_guide_with_copy_number(guide.gr, seg.gr, CN.column = "CN",
guide.column = "Guide", do_parallel = F)
Arguments
guide.gr
GRanges object of sgRNA targets
seg.gr
List of GRanges objects of CN segments
CN.column
column to find CN data in seg.gr
guide.column
guide.gr must contain a column with guide sequence
do_parallel
run on multiple cores
Value
a matrix of CN data, each row is a guide, each column is a sample
cancerdatasci/ceres documentation built on May 20, 2019, 6:44 p.m.
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Description Usage Arguments Value
Description
Get a matrix of CN for CRISPR target sites
Usage
1 2 | intersect_guide_with_copy_number(guide.gr, seg.gr, CN.column = "CN",
guide.column = "Guide", do_parallel = F)
|
Arguments
guide.gr |
GRanges object of sgRNA targets |
seg.gr |
List of GRanges objects of CN segments |
CN.column |
column to find CN data in seg.gr |
guide.column |
guide.gr must contain a column with guide sequence |
do_parallel |
run on multiple cores |
Value
a matrix of CN data, each row is a guide, each column is a sample
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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