Description Usage Arguments Value
Get a matrix of CN for genes
1 2 | intersect_gene_with_copy_number(gene.gr, seg.gr, CN.column = "CN",
gene.column = "Gene", do_parallel = F)
|
gene.gr |
GRanges object of genes |
seg.gr |
List of GRanges objects of CN segments |
CN.column |
column to find CN data in seg.gr |
gene.column |
gene.gr must contain a column with guide sequence |
do_parallel |
run on multiple cores |
a matrix of CN data, each row is a gene, each column is a sample
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