getActivityRangeStats: Returns a table of activity range statistics for a set of...

In cannin/rcellminer: rcellminer: Molecular Profiles, Drug Response, and Chemical Structures for the NCI-60 Cell Lines

Returns a table of activity range statistics for a set of compounds.

Description

Returns a table of activity range statistics for a set of compounds.

Usage

getActivityRangeStats(
  nscSet,
  concFormat = "NegLogGI50M",
  onlyCellMinerExps = TRUE
)

Arguments

nscSet	a character vector specifying NSC identifier(s) for compound(s) of interest.
concFormat	a string selected from "NegLogGI50M" or "IC50MicroM". "NegLogGI50M" specifies activities as the negative log of the 50 inhibitory concentration (molar). "IC50MicroM" specifies activities as the 50 inhibitory concentration (micromolar).
onlyCellMinerExps	a logical value indicating whether to only return experimental data included in CellMiner (default=TRUE).

Value

a table of activity range statistics for a set of compounds.

Examples

nscSet <- c("609699", "740")
getActivityRangeStats(nscSet)
getActivityRangeStats(nscSet, concFormat="IC50MicroM")

cannin/rcellminer documentation built on Aug. 11, 2024, 8:45 a.m.