getMedSenLineActivity: Returns a vector of median sensitive cell line activity...

In cannin/rcellminer: rcellminer: Molecular Profiles, Drug Response, and Chemical Structures for the NCI-60 Cell Lines

Returns a vector of median sensitive cell line activity (-logGI50) values for a set of compounds.

Description

Returns a vector of median sensitive cell line activity (-logGI50) values for a set of compounds.

Usage

getMedSenLineActivity(
  idSet,
  senLineActZThreshold = 0.5,
  onlyCellMinerExps = TRUE,
  dataSource = "NCI60"
)

Arguments

idSet	a character vector specifying identifier(s) for compound(s) of interest.
senLineActZThreshold	the minimum activity z-score for a sensitive cell line (default=0.5).
onlyCellMinerExps	a logical value indicating whether to base results strictly on experimental data included in CellMiner (default=TRUE).
dataSource	character string indicating data source (default="NCI60"). Currently only "NCI60" is supported.

Value

a numeric vector of median sensitive cell line activity (-logGI50) values indexed by the identifiers in idSet.

Examples

idSet <- c("609699", "740")
getMedSenLineActivity(idSet)

cannin/rcellminer documentation built on Aug. 11, 2024, 8:45 a.m.