Man pages for caravagn/TINC
TINC - Tumour-in-Normal contamination assessment
| autofit | Runs a TINC analysis. |
| check_CHIP_variants | Check for CHIP variants in normal and tumour at high VAF |
| fit_example | Example TINC fit |
| load_TINC_input | Load TINC input data. |
| load_VCF_Canvas | Canvas VCF parsing function |
| load_VCF_Canvas_Manta | Merged Canvas and Manta VCF parsing function |
| load_VCF_CNA_DRAGEN | DRAGEN VCF CNA parsing function |
| load_VCF_smallVar_DRAGEN | DRAGEN VCF small variants parsing function |
| load_VCF_Strelka | Strelka 2 VCF parsing function |
| plot_full_page_report | Plot a full page detailed report of the TINC analysis |
| plot_simple_report | Plot a strip short report of the TINC analysis. |
| plot.tin_obj | Plot a TINC analysis. |
| print.tin_obj | Print a TINC object to screen |
| random_TIN | Generate a random dataset for TINC. |
| to_string | Dataframe description of a TINC fit |
