load_VCF_Strelka: Strelka 2 VCF parsing function

In caravagn/TINC: TINC - Tumour-in-Normal contamination assessment

Strelka 2 VCF parsing function

Description

Parse a VCF file from Srelka 2, which stores for PASS SNVs the read depth of the alleles in the nornmal and tumour

Usage

load_VCF_Strelka(file)

Arguments

file	is Strelka 2 vcf file path

Value

Allele depths for normal and tumour for all PASS autosome SNVs

Examples

# not run
## Not run: 
 load_VCF_Strelka("Myfile.vcf")

## End(Not run)

caravagn/TINC documentation built on April 28, 2024, 7:42 a.m.