load_VCF_Canvas: Canvas VCF parsing function
In caravagn/TINC: TINC - Tumour-in-Normal contamination assessment
load_VCF_Canvas R Documentation
Canvas VCF parsing function
Description
Parse a VCF file from Canvas, which stores a
list of segments with absolute CNA events, and tumour purity.
The obtained data, together with mutation calls (loaded elsewhere)
can be used to call function autofit.
Usage
load_VCF_Canvas(file)
Arguments
file
VCF filename.
Value
A named list with the calls and tumour purity.
Examples
# not run
## Not run:
load_VCF_Canvas("Myfile.vcf")
## End(Not run)
caravagn/TINC documentation built on April 28, 2024, 7:42 a.m.
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| load_VCF_Canvas | R Documentation |
Canvas VCF parsing function
Description
Parse a VCF file from Canvas, which stores a list of segments with absolute CNA events, and tumour purity.
The obtained data, together with mutation calls (loaded elsewhere)
can be used to call function autofit.
Usage
load_VCF_Canvas(file)
Arguments
file |
VCF filename. |
Value
A named list with the calls and tumour purity.
Examples
# not run
## Not run:
load_VCF_Canvas("Myfile.vcf")
## End(Not run)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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