load_VCF_smallVar_DRAGEN: DRAGEN VCF small variants parsing function

In caravagn/TINC: TINC - Tumour-in-Normal contamination assessment

DRAGEN VCF small variants parsing function

Description

Parse a small variants VCF file from DRAGEN with information about SNVs and indels

Usage

load_VCF_smallVar_DRAGEN(file)

Arguments

file	is DRAGEN small variants vcf file path

Value

Allele depths for normal and tumour for all PASS autosome SNVs

Examples

# not run
## Not run: 
 load_VCF_smallVar_DRAGEN("Myfile.vcf")

## End(Not run)

caravagn/TINC documentation built on April 28, 2024, 7:42 a.m.