load_VCF_CNA_DRAGEN: DRAGEN VCF CNA parsing function

In caravagn/TINC: TINC - Tumour-in-Normal contamination assessment

DRAGEN VCF CNA parsing function

Description

Parse a VCF CNA file from DRAGEN, which has information on both

Usage

load_VCF_CNA_DRAGEN(file)

Arguments

file	is DRAGEN CNV vcf file path

Value

PASS copy number alteration values in CNAqc format, stored in the 'cna' slot, and estimated tumour purity in the 'purity' slot.

Examples

# not run
## Not run: 
 load_VCF_CNA_DRAGEN("Myfile.vcf")

## End(Not run)

caravagn/TINC documentation built on April 28, 2024, 7:42 a.m.