R/data_CROSS_CRC_ADENOCARCINOMA_NETECOEVO.R

In caravagn/evoverse.datasets: Data released in the evoverse

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# Cross adenocarcinomas
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#' Mutations and copy number from colorectal adenocarcinomas (PMID: 30177804).
#' n = 19 patients, multi-region whole-exome sequencing. Calls generated from
#' Cross et al. (PMID: 30177804).
#'
#' @docType data
#'
#' @usage data(CROSS_CRC_ADENOCARCINOMA_NATECOEVO_2018)
#'
#' @format Data for the adenocarcinoma cohort by Cross et al. The data has been provided
#' by WCh Cross, as of the Nature Ecology and Evolution paper (PMID: 30177804).
#' Mutations are reported as present or absent in each one of the sequenced
#' biopsies. All the data (calls, definition of driver events, etc.) is as provided
#' by the authos, and as used in the paper Caravagna et al (PMID: 30171232) to show
#' repeated evolution in breast cancers with REVOLVER.
#'
#' @keywords datasets
#'
#' @references Cross, W., Kovac, M., Mustonen, V., Temko, D., Davis, H., Baker, A.M.,
#' Biswas, S., Arnold, R., Chegwidden, L., Gatenbee, C. et al., 2018.
#' The evolutionary landscape of colorectal tumorigenesis.
#' Nature Ecology and Evolution, 2(10), p.1661. PMID 30177804.
#'
#' @examples
#' data(CROSS_CRC_ADENOCARCINOMA_NATECOEVO_2018)
#' CROSS_CRC_ADENOCARCINOMA_NATECOEVO_2018
"CROSS_CRC_ADENOCARCINOMA_NATECOEVO_2018"