get_exposure: Get exposures

In caravagnalab/basilica: bascule

Get exposures

Description

Get exposures

Usage

get_exposure(
  x,
  types = get_types(x),
  samples = get_samples(x),
  clusters = get_cluster_labels(x),
  add_groups = FALSE,
  matrix = FALSE
)

Arguments

x	bascule object.
types	List of variant types to retrieve signames for.
samples	List of samples to report exposures for.
clusters	List of cluster labels to report exposures for.
add_groups	Logical. If ‘TRUE' it will add a column with the sample’s group label.
matrix	Logical. If 'TRUE', it will return the signatures in wide format.

Value

Exposures matrix in long or wide format names with names equal to 'types'.

caravagnalab/basilica documentation built on June 11, 2025, 10:18 p.m.