plot_data: Function to visualize the input and reconstructed mutation...

In caravagnalab/basilica: bascule

Function to visualize the input and reconstructed mutation counts.

Description

Function to visualize the input and reconstructed mutation counts.

Usage

plot_data(
  x,
  types = get_types(x),
  samples = get_samples(x),
  clusters = get_cluster_labels(x),
  reconstructed = TRUE,
  color_by_sigs = FALSE
)

Arguments

x	bascule object.
types	List of variant types to visualize.
samples	List of samples to visualize.
clusters	List of clusters to visualize.
reconstructed	Logical. If 'TRUE', the reconstructed counts, i.e., computed as alpha x beta, will be visualized.
color_by_sigs	Logical. If 'TRUE', each context will report the number of mutations split by signature.

Value

ggplot object.

caravagnalab/basilica documentation built on June 11, 2025, 10:18 p.m.