filter_dataset: Filters the input dataset.

In caravagnalab/lineaGT: lineaGT

Filters the input dataset.

Description

Function used to filter observations, i.e. ISs, in the input dataframe with coverage values.

Usage

filter_dataset(
  cov.df,
  min_cov = 5,
  min_frac = 0.05,
  k_interval = c(10, 20),
  metric = "calinski_harabasz_score",
  seed = 5
)

Arguments

cov.df	Input coverage dataset. It must have at least the columns coverage, timepoints, lineage, IS, with the coverage values, timepoint, lineage and IS, respectively.
min_cov	add
min_frac	add
k_interval	add
metric	add
seed	add

Value

a dataset of the same shape as the input one, with filtered observations.

caravagnalab/lineaGT documentation built on June 13, 2025, 6:01 p.m.