plot_growth_rates: Visualize the infered growth rates.
In caravagnalab/lineaGT: lineaGT

plot_growth_rates

R Documentation

Visualize the infered growth rates.

Function to visualize the growth coefficients for each clone and lineage.

plot_growth_rates(
  x,
  highlight = c(),
  min_frac = 0,
  mutations = F,
  timepoints_to_int = list(),
  fit = F,
  show_best = T
)

`x`	a mvnmm object.
`highlight`	a vector of clusters IDs to highlight in the plot.
`min_frac`	min_frac numeric value in `[0,1]` representing the minimum abundance to highlight a clone.
`mutations`	Boolean. If set to `TRUE`, the growth will be visualize for each cluster of mutations.
`timepoints_to_int`	a list to map each `timepoint` value to an integer.
`fit`	add