getExpectedCounts: Implementation of Equation 1 and 2 -> get alpha and beta

Description Usage Arguments Value Author(s)

Description

Implementation of Equation 1 and 2 -> get alpha and beta

Usage

1
getExpectedCounts(L, labeled.amount, unlabeled.amount, N, epsilon, sigma)

Arguments

L

length Li of genes

labeled.amount

labeled amount of gene i in sample j = alpha_ij

unlabeled.amount

unlabeled amount of gene i in sample j = beta_ij

N

number of cells

epsilon

cross contamination rate (=1 in total samples)

sigma

sequencing depth in sample j (independent whether total or labeled sample)

Value

expected counts

Author(s)

Carina Demel


carinademel/RNAlife documentation built on May 13, 2019, 12:43 p.m.