getExpectedCounts: Implementation of Equation 1 and 2 -> get alpha and beta
In carinademel/RNAlife: Quantifying kinetic parameters to determine the RNA life cycle
Description
Usage
Arguments
Value
Author(s)
Description
Implementation of Equation 1 and 2 -> get alpha and beta
Usage
1
getExpectedCounts(L, labeled.amount, unlabeled.amount, N, epsilon, sigma)
Arguments
L
length Li of genes
labeled.amount
labeled amount of gene i in sample j = alpha_ij
unlabeled.amount
unlabeled amount of gene i in sample j = beta_ij
N
number of cells
epsilon
cross contamination rate (=1 in total samples)
sigma
sequencing depth in sample j (independent whether total or labeled sample)
Value
expected counts
Author(s)
Carina Demel
carinademel/RNAlife documentation built on May 13, 2019, 12:43 p.m.
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Description Usage Arguments Value Author(s)
Description
Implementation of Equation 1 and 2 -> get alpha and beta
Usage
1 | getExpectedCounts(L, labeled.amount, unlabeled.amount, N, epsilon, sigma)
|
Arguments
L |
length Li of genes |
labeled.amount |
labeled amount of gene i in sample j = alpha_ij |
unlabeled.amount |
unlabeled amount of gene i in sample j = beta_ij |
N |
number of cells |
epsilon |
cross contamination rate (=1 in total samples) |
sigma |
sequencing depth in sample j (independent whether total or labeled sample) |
Value
expected counts
Author(s)
Carina Demel
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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