Man pages for carlopacioni/HexSimR
An R Package For Post HexSim Simulation Analysis
| calc.ssmd | Calculate SSMDs given a df (or equivalent) of means and stds |
| census.calc | Carry out calculations on a subset of variables in a specific... |
| census.plot | Plots census means across simulated time steps |
| clean.genepop | Remove illegal characters from HexSim generated genepop input... |
| collate.census | Combine together HexSim census outputs across iterations. |
| compress.logs | Compress log files and optionally remove them |
| copy.results | Copy 'HexSimR' results |
| decompress.gz | Decompress files with ".gz" extension, append ".log"... |
| gen.dist | Genetic distance |
| gen.plot | Plot genetic distance with standard deviation bars |
| invasion.front | Calculate the progressive occupancy of an array of hexagons |
| invasion.plot | Plots mean progress of invasion front |
| is.attribs | Check whether the param is an attribute or a node |
| iter.folders | Detect iteration folders |
| LHS.scenarios | Generate LHS scenarios |
| listVectors2data.frame | Convert a list of vectors to a data frame. |
| make.barrier | Modify a hbf with HexSim barrier data |
| make.map | Modify a csv with hexmap data |
| make.plot | Make a plot from a list of data frames |
| make.table | Make a table from HexSimR results |
| make.Xpath | Build a Xpath |
| make.Xpaths | Check conditions and pass the right arguments to make.Xpath |
| m.gen.dist | Mean genetic distance |
| move | Calculates descriptive stats from the HexSim generated report... |
| multi.clean.genepop | Remove illegal characters from several HexSim generated... |
| multi.gen.dist | Genetic distance for multiple scenarios |
| multi.reports | Generate summary statistics for multiple reports |
| Pext | Probability of extinction |
| prep.data | Prepare census data to generate plots |
| pval | Calculate p values |
| ranges | Calculates descriptive stats from the HexSim generated report... |
| read.means | Read means values from output of collate.census |
| read.sds | Read standard deviation values from output of collate.census |
| rename.replicates | Rename (renumber) replicate folders within a scenario |
| report.batch | Write a .xml file to be passed to HexSim to queue 'movements'... |
| scenarios.batch.modifier | Batch modification of scenarios |
| ssmd2xlsx | Save SSMD results to xlsx file |
| SSMD.census | Compare census values against a baseline scenario. |
| SSMD.move | Compare mean movement distances against those of a baseline... |
| SSMD.ranges | Compare ranges descriptive statistics against a baseline... |
| w.combine.log.batch | Write a .bat file to generate combined log files in batch... |
| w.csvmap.batch | Write a .bat file to generate hexmap from a list of csv files |
| w.genepop.batch | Write a .xml file to generate genepop input files in batch... |
| workspace.path.modifier | Modify the path of the workspace and grid file in all... |
| xml.cond.replacement | Conditional replacement of xml elements |
