copy.results: Copy 'HexSimR' results
In carlopacioni/HexSimR: An R Package For Post HexSim Simulation Analysis

This function is deprecated. Please see '?compress.log' to reduce project's size

copy.results(
  path.results,
  out = getwd(),
  copy.invasion = TRUE,
  inv.name = "Invasion.front.xlsx",
  Pext = TRUE,
  comp.census = TRUE,
  comp.move = TRUE,
  move.name = "SSMD_move.xlsx",
  comp.ranges = TRUE,
  ranges.name = "SSMD_ranges.xlsx",
  plots = TRUE,
  scen.results = TRUE,
  scenarios = "all"
)

`path.results`	The path to the 'Results' folder
`out`	The directory where to save the results
`copy.invasion`	Whether to copy data saved from `invasion.front`
`inv.name`	The name of file with results from `invasion.front`
`Pext`	Whether to save results from `Pext`
`comp.census`	Whether to copy data saved from `SSMD_census`
`comp.move`	Whether to copy data saved from `SSMD_move`
`move.name`	The name of file with results from `SSMD_move`
`comp.ranges`	Whether to copy data saved from `SSMD_ranges`
`ranges.name`	The name of file with results from `SSMD_ranges`
`plots`	Whether to copy plots
`scen.results`	Whether to copy results saved in scenarios' folders
`scenarios`	A character vector with the scenarios to be processed or "all"

This function is used to copy/back up HexSimR results maintaining the same directory structure.

copy.results will duplicate all folders present within the 'Results' folder when scen.results=TRUE. Note that only the first level of results will be copied (i.e. no individual replicate results are copied). All .xlsx files present in scenarios' folders will be copied (even those with manually modified names) assuming that these are results to keep. These include genetic mean distances.

It assummes that file names of plots start with "plot" as for HexSimR default. If exists, the file "gen.plot.data.csv" (if the name was not modified) will be copied as part of this option because considered part of the plot files.

With comp.census, comp.move, and comp.ranges can be set whether to copy results of statistical comparisons (output from SSMD_census, SSMD_move, SSMD_ranges).

The SSMD file generated with Pext is copied automatically (if exists and if the name was not modified), along with the other results from this function, when the option Pext=TRUE is selected.

When comp.census=TRUE, all files whose name starts with "SSMD_census" will be copied (note that if some file names has been modified and does not start with "SSMD_census" anymore, these files will not be copied).

carlopacioni/HexSimR documentation built on Nov. 28, 2020, 4:12 p.m.