SSMD.move: Compare mean movement distances against those of a baseline...

Description Usage Arguments Value References

View source: R/HexSimR.R

Description

SSMD.move carries out pairwise comparisons of the mean movement distances against those of a baseline scenario using Strictly Standardised Mean Difference (SSMD, Zhang 2007).

It directly reads the .csv files written with move. It assumes that all files have the same name, which, if different from the default, can be passed with the argumentsum.move.

Usage

1
2
SSMD.move(path.results = NULL, scenarios = "all", base = NULL,
  sum.move = "summary_move.csv")

Arguments

path.results

The path to the 'Results' folder

scenarios

A character vector with the scenarios to be processed or "all"

base

A character vector with the name of the scenario to be used as term of comparison

sum.move

The name of the file where the data are (including the extension).

Value

A list with SSMD in the first element and p-values in the second. These results are also saved to disk as two tabs in an excel file.

References

Zhang, X. D. 2007. A pair of new statistical parameters for quality control in RNA interference high-throughput screening assays. Genomics 89:552-561.


carlopacioni/HexSimR documentation built on April 15, 2019, 10:48 a.m.