test/bench.r
In carltonyfakhry/geneticsCRE: geneticsCRE is an R package that performs genome-wide association study pathway analysis (GWASPA) to identify statistically significant associations between variants on gene regulatory pathways and a given phenotype
library(devtools)
suppressMessages(library(plyr))
suppressMessages(library(dplyr))
load_all()
res2 <- GetBestPaths('/data/gcre/testdata', nCases = 1537, nControls = 1537, method = 1, threshold_percent = 1, K = 12, pathLength = 4, iterations = 10, strataF = NA, nthreads = 4)
res2[,c("Scores", "Pvalues", "Cases", "Controls", "debug")]
carltonyfakhry/geneticsCRE documentation built on May 13, 2019, 12:49 p.m.
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library(devtools)
suppressMessages(library(plyr))
suppressMessages(library(dplyr))
load_all()
res2 <- GetBestPaths('/data/gcre/testdata', nCases = 1537, nControls = 1537, method = 1, threshold_percent = 1, K = 12, pathLength = 4, iterations = 10, strataF = NA, nthreads = 4)
res2[,c("Scores", "Pvalues", "Cases", "Controls", "debug")]
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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