carmencita/ChIC: Quality Control Pipeline for ChIP-Seq Data
Version 1.1.09

Quality control (QC) pipeline for ChIP-seq data using a comprehensive set of QC metrics, including previously proposed metrics as well as novel ones, based on local characteristics of the enrichment profile. The package provides functions to calculate a set of QC metrics, a compendium with reference values and machine learning models to score sample quality.

Getting started

Package details

AuthorCarmen Maria Livi
Bioconductor views ChIPSeq QualityControl
MaintainerCarmen Maria Livi <[email protected]>
LicenseGPL-2
Version1.1.09
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("carmencita/ChIC")
carmencita/ChIC documentation built on Sept. 29, 2018, 3:28 a.m.