carmencita/ChIC: Quality Control Pipeline for ChIP-Seq Data
Version 0.99.84

Quality control pipeline for ChIP-seq data using a comprehensive set of quality control metrics, including previously proposed metrics as well as novel ones, based on local characteristics of the enrichment profile. The framework allows assessing quality of samples with sharp or broad enrichment profiles, whereas previously proposed metrics were not taking this into account. CHIC provides a reference compendium of quality control metrics and trained machine learning models for scoring samples.

Getting started

Package details

AuthorCarmen Maria Livi
Bioconductor views ChIPSeq QualityControl
MaintainerCarmen Maria Livi <[email protected]>
LicenseGPL-2
Version0.99.84
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("carmencita/ChIC")
carmencita/ChIC documentation built on April 19, 2018, 2:38 a.m.