API for carmencita/ChIC
Quality Control Pipeline for ChIP-Seq Data

Global functions
MakeGRangesObject Source code
ReduceOverlappingRegions Source code
createMetageneProfile Man page Source code
f_converNarrowPeakFormat Source code
f_convertFormatBroadPeak Source code
f_convertframe Source code
f_feature.bin.averages Source code
f_fingerPrintPlot Source code
f_getBindingClass Source code
f_getPredictionModel Source code
f_loadDataCompendium Source code
f_maximaAucfunction Source code
f_maximaAucfunctionNorm Source code
f_metaGeneDefinition Source code
f_one.point.scaling Source code
f_plotProfiles Source code
f_plotValueDistribution Source code
f_prepareData Source code
f_qflag Source code
f_readFile Source code
f_removeLocalTagAnomalies Source code
f_shortenFrame Source code
f_sortAndBinning Source code
f_spotfunction Source code
f_spotfunctionNorm Source code
f_t.get.gene.av.density Source code
f_t.get.gene.av.density_TES Source code
f_t.get.gene.av.density_TSS Source code
f_tagDensity Source code
f_two.point.scaling Source code
f_variabilityValues Source code
f_variabilityValuesNorm Source code
getCrossCorrelationScores Man page Source code
getPeakCallingScores Man page Source code
masked_getGeneAvDensity_TES_TSS Source code
masked_t.get.gene.av.density Source code
metagenePlotsForComparison Man page Source code
plotReferenceDistribution Man page Source code
predictionScore Man page Source code
qualityScores_EM Man page Source code
qualityScores_GM Man page Source code
qualityScores_LM Man page Source code
qualityScores_LMgenebody Man page Source code
readBamFile Man page Source code
removeLocalTagAnomalies Man page Source code
tagDensity Man page Source code
carmencita/ChIC documentation built on April 19, 2018, 2:38 a.m.