Files in carmencita/ChIC

Quality Control Pipeline for ChIP-Seq Data

R/chicWrapper.R R/createMetageneProfile.R R/getCrossCorrelationScores.R R/getPeakCallingScores.R R/listFunctions.R R/metagenePlotsForComparison.R R/peakDownSampling.R R/plotReferenceDistribution.R R/predictionScore.R R/privateFunctions.R R/qualityScores_EM.R R/qualityScores_GM.R R/qualityScores_LM.R R/qualityScores_LMgenebody.R R/readBamFile.R R/removeLocalTagAnomalies.R R/tagDensity.R README.md man/chicWrapper.Rd man/createMetageneProfile.Rd man/downsample_ChIPpeaks.Rd man/getCrossCorrelationScores.Rd man/getPeakCallingScores.Rd man/listAvailableElements.Rd man/listDatasets.Rd man/listMetrics.Rd man/metagenePlotsForComparison.Rd man/plotReferenceDistribution.Rd man/predictionScore.Rd man/qualityScores_EM.Rd man/qualityScores_GM.Rd man/qualityScores_LM.Rd man/qualityScores_LMgenebody.Rd man/readBamFile.Rd man/removeLocalTagAnomalies.Rd man/tagDensity.Rd vignettes/ChIC-Vignette.pdf vignettes/phantomCrossCorrelation_onSubset.pdf