Man pages for carmonalab/UCell
Rank-based signature enrichment analysis for single-cell data
| AddModuleScore_UCell | Calculate module enrichment scores from single-cell data... |
| calculate_Uscore | Calculate rankings and scores for query data and given... |
| check_genes | Check genes |
| check_signature_names | Check signature names and add standard names is missing |
| data_to_ranks_data_table | Calculate per-cell feature rankings |
| knn_smooth_scores | Smoothing scores by KNN |
| rankings2Uscore | Get signature scores from pre-computed rank matrix |
| sample.matrix | Sample dataset to test UCell installation |
| ScoreSignatures_UCell | Calculate module enrichment scores from single-cell data |
| SmoothKNN | Smooth signature scores by kNN |
| split_data.matrix | Split data matrix into smaller sub-matrices ('chunks') |
| StoreRankings_UCell | Calculate and store gene rankings for a single-cell dataset |
| UCell | UCell: Robust and scalable single-cell gene signature scoring |
| u_stat | Calculate Mann Whitney U from a vector of ranks |
| u_stat_signature_list | Calculate U scores for a list of signatures, given a rank... |
