sample.matrix: Sample dataset to test UCell installation

In carmonalab/UCell: Rank-based signature enrichment analysis for single-cell data

Sample dataset to test UCell installation

Description

A sparse matrix (class "dgCMatrix") of single-cell transcriptomes (scRNA-seq) for 30 cells and 20729 genes. Single-cell UMI counts were normalized using a standard log-normalization: counts for each cell were divided by the total counts for that cell and multiplied by 10,000, then natural-log transformed using log1p.

This a subsample of T cells from the large scRNA-seq PBMC dataset published by Hao et al. and available as UMI counts at https://atlas.fredhutch.org/data/nygc/multimodal/pbmc_multimodal.h5seurat

Usage

sample.matrix

Format

A sparse matrix of 30 cells and 20729 genes.

Source

https://doi.org/10.1016/j.cell.2021.04.048

carmonalab/UCell documentation built on Nov. 4, 2024, 5:32 p.m.