rankings2Uscore: Get signature scores from pre-computed rank matrix

In carmonalab/UCell: Rank-based signature enrichment analysis for single-cell data

Get signature scores from pre-computed rank matrix

Description

Get signature scores from pre-computed rank matrix

Usage

rankings2Uscore(
  ranks_matrix,
  features,
  chunk.size = 100,
  w_neg = 1,
  BPPARAM = NULL,
  ncores = 1,
  force.gc = FALSE,
  name = "_UCell"
)

Arguments

ranks_matrix	A rank matrix
features	List of signatures
chunk.size	How many cells per matrix chunk
w_neg	Weight on negative signatures
BPPARAM	A BioParallel object to instruct UCell how to parallelize
ncores	How many cores to use for parallelization?
force.gc	Force garbage collection to recover RAM? (FALSE)
name	Name suffix for metadata columns ("_UCell")

Value

               A list of signature scores

carmonalab/UCell documentation built on Nov. 4, 2024, 5:32 p.m.