u_stat_signature_list: Calculate U scores for a list of signatures, given a rank...

In carmonalab/UCell: Rank-based signature enrichment analysis for single-cell data

Calculate U scores for a list of signatures, given a rank matrix

Description

Calculate U scores for a list of signatures, given a rank matrix

Usage

u_stat_signature_list(
  sig_list,
  ranks_matrix,
  maxRank = 1000,
  sparse = FALSE,
  w_neg = 1
)

Arguments

sig_list	A list of signatures
ranks_matrix	Matrix of pre-computed ranks
maxRank	Max number of features to include in ranking, for u_stat function
sparse	Whether the vector of ranks is in sparse format
w_neg	Weight on negative signatures

Value

A matrix of U scores

carmonalab/UCell documentation built on Nov. 4, 2024, 5:32 p.m.