knn_smooth_scores: Smoothing scores by KNN
In carmonalab/UCell: Rank-based signature enrichment analysis for single-cell data
View source: R/HelperFunctions.R
knn_smooth_scores R Documentation
Smoothing scores by KNN
Description
Smoothing scores by KNN
Usage
knn_smooth_scores(matrix = NULL, nn = NULL, decay = 0.1, up.only = FALSE)
Arguments
matrix
Input data matrix
nn
A nearest neighbor object returned by
BiocNeighbors::findKNN
decay
Exponential decay for nearest neighbor weight: (1-decay)^n
up.only
If set to TRUE, smoothed scores will only be
allowed to increase by smoothing
Value
A dataframe of knn-smoothed scores
carmonalab/UCell documentation built on April 26, 2024, 11:51 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
View source: R/HelperFunctions.R
| knn_smooth_scores | R Documentation |
Smoothing scores by KNN
Description
Smoothing scores by KNN
Usage
knn_smooth_scores(matrix = NULL, nn = NULL, decay = 0.1, up.only = FALSE)
Arguments
matrix |
Input data matrix |
nn |
A nearest neighbor object returned by BiocNeighbors::findKNN |
decay |
Exponential decay for nearest neighbor weight: (1-decay)^n |
up.only |
If set to TRUE, smoothed scores will only be allowed to increase by smoothing |
Value
A dataframe of knn-smoothed scores
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.