API for cavei/cellCB
Cell City Band
| Global functions | |
|---|---|
| .computeRPKM | Source code |
| anyCmpSigByLogFC | Man page Source code |
| anyLogFC | Man page Source code |
| assignCellCode | Man page Source code |
| assignColorCode | Man page Source code |
| associateGeneToCells | Source code |
| averageReplicate | Man page Source code |
| cliPvalues | Source code |
| cluster.goTerms | Source code |
| clusterTimes | Man page Source code |
| clusterWithTca | Man page Source code |
| combineActiveAndConstitutive | Source code |
| computeEmpiricalUnvariants | Man page Source code |
| computeNodeSize | Source code |
| computeRPKM | Man page Source code |
| computeResiduals | Man page Source code |
| convertGskb2Term2Gene | Man page Source code |
| convertGskb2Term2Name | Man page Source code |
| create.GO_DB | Source code |
| createSeqExpressionSet | Man page Source code |
| createSet | Man page Source code |
| createSifOFLigandReceptor | Source code |
| defineCellExpression | Man page Source code |
| detectReplicates | Source code |
| dotplot_internal | Source code |
| edgeList | Man page Source code |
| edgeR.allCmpOnTimeWithRUV | Man page Source code |
| edgeR.anovaOnTime | Man page Source code |
| edgeR.anovaOnTimeWithRUV | Man page Source code |
| exclude_go_terms_by_counts | Source code |
| extractDayLigandReceptorNetwork | Man page Source code |
| extractDayNetwork | Man page Source code |
| extractDegsPvaluesWithLFC | Man page Source code |
| extractDegsPvaluesWithLFCFromRData | Man page Source code |
| extractDegsWithLFC | Man page Source code |
| extractGenesBehavious | Man page Source code |
| extractLigandReceptorBehaviours | Man page Source code |
| filterExpression | Man page Source code |
| filterExpressionByRpkmMean | Man page Source code |
| filterExps | Man page Source code |
| filter_dailyList | Source code |
| fullAnalysis | Source code |
| getActiveAtDaysFromObj | Man page Source code |
| getActiveAtDaysFromRData | Man page Source code |
| getCellExpressionSignature | Man page Source code |
| getCrossPopulationDEGS | Source code |
| getDEGsAcrossPopulation | Source code |
| getDEGsPvaluesFromObj | Man page Source code |
| getDEGsPvaluesFromRData | Man page Source code |
| getDailyNodeSize | Source code |
| getNormExpressionFromRData | Man page Source code |
| getRpkmExpressionFromRData | Man page Source code |
| groupByCluster | Source code |
| groupByCluster_map | Source code |
| guess_best_sets | Source code |
| guess_best_sets_map | Source code |
| levSim | Source code |
| loadCellRData | Source code |
| meltListOfVectors | Man page Source code |
| meltTablesWithListNames | Man page Source code |
| meltTablesWithLoosers | Man page Source code |
| mergeColumns | Man page Source code |
| my.compareCluster | Man page |
| my.enricher | Man page |
| na2false | Source code |
| na2true | Source code |
| paraWiseMergeTimePoints | Man page Source code |
| paraWiseMultiMergeTimePoints | Man page Source code |
| personal.dotplot.compareClusterResult | Source code |
| personal.fortify.compareClusterResult | Source code |
| plotDiagnostic | Source code |
| removeElement | Man page Source code |
| remove_words | Source code |
| rename_description | Source code |
| rename_description_map | Source code |
| renderHTMLvideo | Man page Source code |
| renderHTMLvideo2.0 | Man page Source code |
| resolveAndOrder | Source code |
| resolveWarnings | Man page Source code |
| runDignosticWithParameters | Source code |
| runDignosticWithParametersTotal | Source code |
| runWithDiagnosticPlots | Source code |
| runWithParameters | Source code |
| runWithParametersCell | Source code |
| runWithParametersCellRpkm | Source code |
| runWithParametersRpkm | Man page Source code |
| runWithParametersTotal | Source code |
| runWithParametersTotalRpkm | Man page Source code |
| sigTable_filter_by_clusters | Man page Source code |
| sigTable_filter_by_clusters_map | Man page Source code |
| summaryBarplot | Man page Source code |
| tables2maps | Source code |
| watchCluster | Man page Source code |
| wiseMergeTimePoints | Man page Source code |
