Man pages for cavei/cellCB
Cell City Band
| additional-TCA | Perform TCA based clustering |
| averageReplicate | Average Replicates Gene Wise |
| defineCellExpression | Define Cell Expression |
| edgeList | From edge matrix to edge List |
| edgeR.allCmpOnTimeWithRUV | ANOVA like analysis (edgeR) |
| edgeR.anovaOnTime | ANOVA like analysis (edgeR) |
| edgeR.anovaOnTimeWithRUV | ANOVA like analysis (edgeR) with RUV on times |
| gskb-handling | Convert to Gene |
| io-object | Collect DEGs Pvalues with LogFold Change from RData. |
| io-RData | Load and extract normalized expression from RData. |
| log-fold-change-handling | Extract the contrasts with a given log fold change (lfc) from... |
| melt-list-into-tables | Melt list of tables |
| mergeColumns | Merge columns |
| my.compareCluster | Perform compare cluster |
| my.enricher | Perform enricher with a slight change |
| network-handling | Given a list of ligand receptor it extracts the network |
| paracrine-autocrine-functions | get Cell Expression Signature |
| runWithParametersRpkm | Run a RUV with parameters |
| runWithParametersTotalRpkm | Run in total muscle [DEPRECATED] |
| RUV-handling | Create an expression set using EDASeq function |
| sigTable_filter_by_clusters | Filter significance table pickeing 1 term for cluster |
| sigTable_filter_by_clusters_map | Filter significance table picking 1 term for cluster_map |
