my.enricher: Perform enricher with a slight change

my.enricherR Documentation

Perform enricher with a slight change

Description

Perform enricher with a slight change

Usage

my.enricher(
  gene,
  go_bp_full_data,
  pvalueCutoff = 0.05,
  pAdjustMethod = "BH",
  universe,
  qvalueCutoff = 0.2,
  minGSSize = 10,
  maxGSSize = 500,
  readable = FALSE,
  pool = FALSE,
  ont = "BP",
  keyType = "SYMBOL",
  OrgDb = "org.Mm.eg.db"
)

Arguments

gene

gene

go_bp_full_data

go biological processed

pvalueCutoff

pvalue cut off

pAdjustMethod

BH

universe

the full list of genes

qvalueCutoff

0.2

minGSSize

10

maxGSSize

500

readable

FALSE

pool

FALSE

ont

BP

keyType

SYMBOL

OrgDb

org.Mm.eg.db


cavei/cellCB documentation built on Sept. 14, 2023, 8:15 a.m.