additional-TCA: Perform TCA based clustering

In cavei/cellCB: Cell City Band

Perform TCA based clustering

Description

Perform TCA based clustering

Perform TCA based clustering

Visualize the cluster produced

Usage

clusterWithTca(esetRUV, genes, clusterK = 9)

clusterTimes(
  normMatrix,
  days,
  genes,
  algo = "km",
  clusterK = 9,
  takeLog = FALSE
)

watchCluster(tca, cols = 3)

Arguments

esetRUV	expression set RUV
genes	gene names
clusterK	number of clusters K
normMatrix	normalized matrix
days	days
algo	algorithm
takeLog	logical; need log?
tca	the results of clusterTimes function
cols	subdivide the column in _col_ cols

Value

list with all you need

TCA object

cavei/cellCB documentation built on Sept. 14, 2023, 8:15 a.m.