log-fold-change-handling: Extract the contrasts with a given log fold change (lfc) from...

In cavei/cellCB: Cell City Band

Extract the contrasts with a given log fold change (lfc) from anova-like (edgeR) lfc table

Description

Extract the contrasts with a given log fold change (lfc) from anova-like (edgeR) lfc table

Extract All Genes with given log fold change (lfc) from anova-like lfc table

Usage

anyCmpSigByLogFC(x, cmp, lfcThr = 2, baseCellCmp = "ec")

anyLogFC(x, lfcThr = 2)

Arguments

x	a vector of logFoldChanges
cmp	the vector of contrasts, typically colnames of lfc table
lfcThr	the lfc threshold (in absolute value)
baseCellCmp	the basal cell used in comparison

Value

a data.frame with

gene	the gene
num	the numerator of the contrast
den	the denominator of the contrast
winner	the winner of the contrast
looser	the loosers of the contrast

TRUE / FALSE

cavei/cellCB documentation built on Sept. 14, 2023, 8:15 a.m.