Description Usage Arguments Details Value
Survival Analysis using Cox Model on Principal Components. For internal use only.
1 2 3 | pcsSurvCox(genes, expr, annotations, method = c("regular", "topological",
"sparse"), shrink = FALSE, cliques = NULL, maxPCs = 10,
survFormula = "Surv(days, status) ~", robust = FALSE)
|
genes |
vector of genes |
expr |
whole expression matrix |
annotations |
survival annotations |
method |
PCA methods |
shrink |
shrink covariance matrix |
cliques |
when method=topological use this cliques to define topology in IPF |
maxPCs |
maximum number of PC to consider |
survFormula |
survival forumula to use |
robust |
should be used the robust mode for cox |
For internal use only.
cox model object
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