generate_TMixClust_report: Generates a series of files containing a summary of the...

Description Usage Arguments Value Author(s) References Examples

View source: R/external_TMixClust.R

Description

generate_TMixClust_report

Usage

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generate_TMixClust_report(TMixClust_object, report_folder = paste(getwd(),
  "/TMixClust_report/", sep = ""), data_color = "#fd8d3c", x_label = "time",
  y_label = "value")

Arguments

TMixClust_object

list object created by the TMixClust function (see function TMixClust)

report_folder

full path of the folder where the report files will be saved. Default is TMixClust_report/ folder in current working directory.

data_color

color of the time series to be used when generating the cluster plots. Default is orange.

x_label

label of the x axis for the cluster plots. Default is "time"

y_label

label of the y axis for the cluster plots. Default is "value"

Value

Produces a series of files containing information about the clustering results and saves them in the provided folder location. The folder contains the following:

Author(s)

Monica Golumbeanu, monica.golumbeanu@bsse.ethz.ch

References

Golumbeanu M, Desfarges S, Hernandez C, Quadroni M, Rato S, Mohammadi P, Telenti A, Beerenwinkel N, Ciuffi A. (2017) Dynamics of Proteo-Transcriptomic Response to HIV-1 Infection.

Examples

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## Not run: 
# Load the toy time series data provided with the TMixClust package
data(toy_data_df)

# Cluster the toy data with default parameters
TMixClust_obj = TMixClust(toy_data_df)

# Generate a TMixClust report in the current working directory
generate_TMixClust_report(TMixClust_obj)

## End(Not run)

cbg-ethz/TMixClust documentation built on May 30, 2019, 8:28 a.m.