R/data.R

In cbg-ethz/pareg: Pathway enrichment using a regularized regression approach

#' Collection of pathway similarity matrices.
#'
#' Contains matrices for various pathway databases and similarity measures.
#' Note that the matrices are sparse, upper triangular and subsampled to
#' a maximum size of $1000x1000$ if necessary.
#' They can be transformed to a dense representation
#' using \code{pareg::as_dense_sim}.
#'
#' @format A list of lists of matrices.
#' * Pathway database 1
#'   * Similarity measure 1
#'   * Similarity measure 2
#'   * ...
#' * Pathway database 2
#' * ...
"pathway_similarities"