Man pages for cbiagii/pcitRif
Coexpression for Transcription Factors using Regulatory Impact Factors and Partial Correlation and Information Theory analysis

bivar.awkSummary statistics from two variables
CeTF-classThe CeTF Class
CeTFdemoCeTFdemo class object example
clustCoefCalculate the clustering coefficient
clustCoefPercentageCalculate the clustering coefficient as a percentage
densityPlotDensity distribution of correlation coefficients and...
expDiffDifferential expression analysis
getData-methodsData accessor for a CeTF class object.
getDE-methodsDifferential Expression accessor for a CeTF class object.
getGroupGOFunctional Profile of a gene set at specific GO level
histPlotHistogram of connectivity distribution
InputData-methodsInput data accessor for a CeTF class object.
netConditionsPlotNetwork plot of gene-gene/gene-TFs interactions
netGOTFPlotPlot a network for Ontologies, genes and TFs
NetworkData-methodsNetworks data accessor for a CeTF class object.
normExpNormalized expression transformation
OutputData-methodsOutput data accessor for a CeTF class object.
PCITPartial Correlation and Information Theory (PCIT) analysis
RIFRegulatory Impact Factors (RIF) analysis
RIF_inputRegulatory Impact Factors (RIF) input
runAnalysisWhole analysis of Regulatory Impact Factors (RIF) and Partial...
simCountsSimulated counts data
simNormSimulated normalized data
SmearPlotSmear plot for Differentially Expressed genes and TFs
TFsTranscripition Factors data
toleranceTolerance level between 3 pairwise correlations
cbiagii/pcitRif documentation built on Jan. 8, 2020, 4:15 p.m.