RIFPlot: Relationship plots between RIF1, RIF2 and DE genes

In cbiagii/pcitRif: Coexpression for Transcription Factors using Regulatory Impact Factors and Partial Correlation and Information Theory analysis

Relationship plots between RIF1, RIF2 and DE genes

Description

Generate plots for the relationship between the RIF output analysis (RIF1 and RIF2) and for differentially expressed genes (DE).

Usage

RIFPlot(object, color = "darkblue", type = "RIF")

Arguments

object	CeTF object resulted from runAnalysis function.
color	Color of points (default: darkblue)
type	Type of plot. The available options are: RIF or DE (default: RIF)

Details

This function can only be used after using the runAnalysis function as it uses the CeTF class object as input.

Value

Returns a relationship plot between RIF1 and RIF2 or a plot with the relationship between RIF1 or RIF2 with DE genes.

Examples

# load the CeTF class object resulted from runAnalysis function
data(CeTFdemo)

# performing RIFPlot for RIF
RIFPlot(object = CeTFdemo, 
        color  = 'darkblue', 
        type   = 'RIF')

        
# performing RIFPlot for DE
RIFPlot(object = CeTFdemo, 
        color  = 'darkblue', 
        type   = 'DE')

cbiagii/pcitRif documentation built on Feb. 5, 2023, 9:03 p.m.