netConditionsPlot: Network plot of gene-gene/gene-TFs interactions

In cbiagii/pcitRif: Coexpression for Transcription Factors using Regulatory Impact Factors and Partial Correlation and Information Theory analysis

Network plot of gene-gene/gene-TFs interactions

Description

Generate the network plot of gene-gene/gene-TFs interactions for both conditions.

Usage

netConditionsPlot(x)

Arguments

x	CeTF object resulted from runAnalysis function.

Value

Returns the network plot for both conditions.

Examples

# loading a simulated counts data
data('simCounts')

# performing runAnalysis function
out <- runAnalysis(mat = simCounts,
                   conditions=c('cond1', 'cond2'),
                   lfc = 3,
                   padj = 0.05,
                   TFs = paste0('TF_', 1:1000),
                   nSamples1 = 10,
                   nSamples2= 10,
                   tolType = 'mean',
                   diffMethod = 'Reverter',
                   data.type = 'counts')

# plotting networks conditions
netConditionsPlot(out)

cbiagii/pcitRif documentation built on Feb. 5, 2023, 9:03 p.m.