findAlphat: Alphat calculator Plots a histogram of FACs input and allows...
In chadsmith123/scsa: Analysis of Sperm Chromatin Structure Assay (SCSA) Flow Cytometry Data
Description
Usage
Arguments
Value
References
See Also
Examples
Description
Alphat calculator
Plots a histogram of FACs input and allows the user to select the Alphat threshold.
Usage
1
findAlphat(x, channels)
Arguments
x
data frame from scsaDat
channels
number of channels used in FACs acquisition
Value
Returns Alphat threshold value selected by the user.
References
Evenson DP, Larson KL, Jost LK (2002) Sperm Chromatin Structure Assay: Its Clinical Use for Detecting Sperm DNA Fragmentation in Male Infertility and Comparisons With Other Techniques. Journal of Andrology, 23, 25–43.
See Also
scsa, scsaDat, findHDS
Examples
1
2
3
4
5
6
## Not run:
data(zf_facs)
x <- scsaDat(dat)
findAlphat(x)
## End(Not run)
chadsmith123/scsa documentation built on May 13, 2019, 3:09 p.m.
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Description Usage Arguments Value References See Also Examples
Description
Alphat calculator Plots a histogram of FACs input and allows the user to select the Alphat threshold.
Usage
1 | findAlphat(x, channels)
|
Arguments
x |
data frame from scsaDat |
channels |
number of channels used in FACs acquisition |
Value
Returns Alphat threshold value selected by the user.
References
Evenson DP, Larson KL, Jost LK (2002) Sperm Chromatin Structure Assay: Its Clinical Use for Detecting Sperm DNA Fragmentation in Male Infertility and Comparisons With Other Techniques. Journal of Andrology, 23, 25–43.
See Also
scsa, scsaDat, findHDS
Examples
1 2 3 4 5 6 | ## Not run:
data(zf_facs)
x <- scsaDat(dat)
findAlphat(x)
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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