Description Usage Arguments Value References See Also Examples
Sperm Chromatin Structure Assay (SCSA) FACs Analyzer
1 |
x |
square matrix of raw FACs data from a sample |
... |
additional arguments to be passed. |
Returns a scsa object
Evenson DP, Larson KL, Jost LK (2002) Sperm Chromatin Structure Assay: Its Clinical Use for Detecting Sperm DNA Fragmentation in Male Infertility and Comparisons With Other Techniques. Journal of Andrology, 23, 25–43.
scsaDat, scsaStats, findHDS, findAlphat
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 | data(zf_facs)
## Not run:
scsa(zf_facs)
# Runs user through the SCSA pipeline.
## End(Not run)
dat <- scsa(zf_facs,id="sample1", thresh.alphat=0.25,thresh.HDS=500, max.green=1023)
# Returns SCSA object with manual configuration
print(dat)
# Returns sample ID, DFI and HDS
stats.scsa(dat)
# Returns SCSA statistics
plot(dat)
# Returns a plot of FACs data for the sample.
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