scsa: Sperm Chromatin Structure Assay (SCSA) FACs Analyzer

In chadsmith123/scsa: Analysis of Sperm Chromatin Structure Assay (SCSA) Flow Cytometry Data

Description

Sperm Chromatin Structure Assay (SCSA) FACs Analyzer

Usage

scsa(x, ...)

Arguments

x	square matrix of raw FACs data from a sample
...	additional arguments to be passed.

Value

Returns a scsa object

References

Evenson DP, Larson KL, Jost LK (2002) Sperm Chromatin Structure Assay: Its Clinical Use for Detecting Sperm DNA Fragmentation in Male Infertility and Comparisons With Other Techniques. Journal of Andrology, 23, 25–43.

See Also

scsaDat, scsaStats, findHDS, findAlphat

Examples

data(zf_facs)

## Not run: 
scsa(zf_facs)
# Runs user through the SCSA pipeline.

## End(Not run)
dat <- scsa(zf_facs,id="sample1", thresh.alphat=0.25,thresh.HDS=500, max.green=1023)
# Returns SCSA object with manual configuration

print(dat)
# Returns sample ID, DFI and HDS

stats.scsa(dat)
# Returns SCSA statistics 

plot(dat)
# Returns a plot of FACs data for the sample.

chadsmith123/scsa documentation built on May 13, 2019, 3:09 p.m.