scsaDat: FACs data importer

Description Usage Arguments Value References See Also Examples

Description

Imports raw data from a FACs sample.

Usage

1
scsaDat(x, id, max.green = dim(x)[1], channels = dim(x)[2], ...)

Arguments

x

matrix of cell counts with the "green" values in rows and "red" values in columns

id

sample ID name

max.green

maximum value of green to include in the analysis

channels

number of channels used in FACs acquisition

...

additional arguments to be passed

Value

Returns a list of the frequency of cells in each green/red channel and calculates alphat

References

Evenson DP, Larson KL, Jost LK (2002) Sperm Chromatin Structure Assay: Its Clinical Use for Detecting Sperm DNA Fragmentation in Male Infertility and Comparisons With Other Techniques. Journal of Andrology, 23, 25–43.

See Also

scsa, scsaDat, findHDS, findAlphat

Examples

1
2
data(zf_facs)
scsaDat <- scsaDat(x=zf_facs,id="Sample 1",max.green=1023,channels=1024)

chadsmith123/scsa documentation built on May 13, 2019, 3:09 p.m.