scsaDat: FACs data importer

In chadsmith123/scsa: Analysis of Sperm Chromatin Structure Assay (SCSA) Flow Cytometry Data

Description

Imports raw data from a FACs sample.

Usage

scsaDat(x, id, max.green = dim(x)[1], channels = dim(x)[2], ...)

Arguments

x	matrix of cell counts with the "green" values in rows and "red" values in columns
id	sample ID name
max.green	maximum value of green to include in the analysis
channels	number of channels used in FACs acquisition
...	additional arguments to be passed

Value

Returns a list of the frequency of cells in each green/red channel and calculates alphat

References

Evenson DP, Larson KL, Jost LK (2002) Sperm Chromatin Structure Assay: Its Clinical Use for Detecting Sperm DNA Fragmentation in Male Infertility and Comparisons With Other Techniques. Journal of Andrology, 23, 25–43.

See Also

scsa, scsaDat, findHDS, findAlphat

Examples

data(zf_facs)
scsaDat <- scsaDat(x=zf_facs,id="Sample 1",max.green=1023,channels=1024)

chadsmith123/scsa documentation built on May 13, 2019, 3:09 p.m.