Annotation | Annotates cell populations found using CytomeTree. |
BinaryTree | Builds a binary tree. |
bootstrapCI | Bootstrapped Confidence Interval. |
CytEM | E-M algorithm. |
CytomeTree | Binary tree algorithm for cytometry data analysis. |
cytometree-package | Binary tree algorithm for cytometry data analysis. |
DLBCL | Diffuse large B-cell lymphoma data set from the FlowCAP-I... |
FmeasureC | C++ implementation of the F-measure computation |
FmeasureC_no0 | C++ implementation of the F-measure computation without the... |
GaussMix | Bi-modal normal mixture distribution. |
GaussMix2 | tri-modal normal mixture distribution. |
HIPC | HIPC T cell data set from HIPC program, patient 12828. The... |
KmeansOPT | Finds the partition which minimize the within-leaves sum of... |
LeavesCenters | Computes means of leaves given cytomeTreeObj. |
LeavesMedians | Computes medians of leaves given cytomeTreeObj. |
Partition2gr | Computes N-1 possible partitions of ordered N into 2 subsets. |
Partition3gr | Computes (N-1)*(N-2) possible partitions of N into 3 subsets. |
plot_cytopop | Plot the cell count for each population using CytomeTree. |
plot_graph | Plot the binary tree built using CytomeTree. |
plot_nodes | Plot the distribution of the observed cells at each node of... |
RetrievePops | Retrieve cell populations found using Annotation. |
TreeAnnot | Returns the underlying annotation given a tree pattern. |
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