Description Usage Arguments Details Value Author(s) Examples
Plot the distribution of the observed cells at each node of the binary tree built using CytomeTree.
1 2 | plot_nodes(CytomeTreeObj, nodes = NULL, nodesPerCol = NULL,
nodesPerRow = NULL, ...)
|
CytomeTreeObj |
An object of class CytomeTree. |
nodes |
A list of character elements containing the name of
the nodes for which the distribution is to be plotted. Default is
|
nodesPerCol |
an integer specifying the number of plots to be
displayed per column when plotting multiple nodes at once. Default is
|
nodesPerRow |
an integer specifying the number of plots to be
displayed per row when plotting multiple nodes at once. Default is
|
... |
further arguments to be passed to |
if both nodesPerCol
and nodesPerRow
are NULL
then all the nodes are plotted on a single page.
a list of ggplot2
plot objects, containing each node plot.
Chariff Alkhassim, Boris Hejblum
1 2 3 | data(DLBCL)
myct <- CytomeTree(DLBCL[, c("FL1", "FL2", "FL4")], minleaf = 1, t=.1)
plot_nodes(myct)
|
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